OH SFS Handbook

latest

Main page

About the OH SFS Handbook
License

Guidelines

EFSA and ECDC
International efforts

Sequencing technologies

Sequencing Technologies
Sequence file formats

Bioinformatics methods

Sequence analysis tool chains
Quality control and preprocessing
Data preprocessing
Data Production

Single isolate analysis

MLST
cgMLST
Serotyping
Virulence and AMR Detection

Cluster analysis

Clustering of xMLST data
SNPs and variant calling
Phylogenetic analysis

Compute Infrastructure

Storage and Compute Infrastructures
Workflow managers

Species analysis

Escherichia coli analysis
Campylobacter analysis
Salmonella analysis
Listeria monocytogenes analysis

Surveillance

Challenges for One Health surveillance

Contributing

How to contribute to this project
Contributors to this handbook
Contributor Covenant Code of Conduct

OH SFS Handbook

Docs »
Data management analysis platforms
Edit on GitHub

Data management analysis platforms¶

© Copyright ORION and BeONE OHEJP Revision bd15ac45.

Built with Sphinx using a theme provided by Read the Docs.

Read the Docs v: latest

Versions: latest

Downloads: pdf; html; epub

On Read the Docs: Project Home; Builds

Free document hosting provided by Read the Docs.