One Health Sequencing for Surveillance HandBook

This website aims to be a handbook that can help national and local labs to build capacity and competence on the use of NGS methods for surveillance purposes. This work was started as part of the “One health surRveillance Initiative On harmonization of data collection and interpretatioN (ORION)” One Health EJP project, and continued as part of the “BeOne: Building Integrative Tools for One Health Surveillance” project.

The ORION project, launched in 2018, aimed at establishing and strengthening inter-institutional collaboration and transdisciplinary knowledge transfer in the area of surveillance data integration and interpretation, along the One Health (OH) objective of improving health and well-being. The BeOne project, launched in 2020, aims at developing an integrated surveillance dashboard in which molecular and epidemiological data for foodborne pathogens can be interactively analysed, visualised and interpreted by the relevant experts across disciplines and sectors.

This handbook consists of several parts, to understand more about how this handbook works, please read more about it in the About page.

New contributions to this handbook are very welcome. For instructions on how to contribute, please see our Contributing page.

All the materials in this handbook is under the CC-BY license.